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Changelog
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
Just a few fixes, also added two flavours of scripts for merging coverage files (e.g. for when R1 and R2 had been run in single-end mode)
exit 0 that would terminate runs after processing a single (set of) input file(s).--gc_context as intended and mentioned in the help text. Fixes #621