What's Changed

• check installed tools and report issues by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/389
• only fail if non-installed programs are required by @ASLeonard in https://github.com/pangenome/pggb/pull/390
• refresh documentation [skip ci] by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/391
• update wfmash/odgi/smoothxg by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/392
• Resolving the 'Illegal option --' error by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/395
• fix workflow by updating data table by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/396
• Be smoother with the ANI filter in the mapping step by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/397
• update vcfbub and vg, and a few other tools by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/401
• wfmash v0.16.0 by @ekg in https://github.com/pangenome/pggb/pull/402
• PanSN requires a number as haplotype_id by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/405
• updated link example pangenomes by @nsmlzl in https://github.com/pangenome/pggb/pull/409
• Add pggb version to its own log by @ASLeonard in https://github.com/pangenome/pggb/pull/408
• add a fall back version by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/410
• update vg by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/411
• update wfmash by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/413
• update odgi/smoothxg by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/414
• Revert wfmash 0.14.0, update seqwish, vcflib by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/416

New Contributors

• @nsmlzl made their first contribution in https://github.com/pangenome/pggb/pull/409

Full Changelog: https://github.com/pangenome/pggb/compare/v0.6.0...v0.7.0