htslib

Download the source code here: htslib-1.23.tar.bz2.(The "Source code" downloads are generated by GitHub and are incomplete as they are missing some generated files.)

Updates

• HTSlib 1.22 changed the VCF reader so that it stored GT prefixed phasing information, but only for files specifying `fi...

Download the source code here: htslib-1.22.1.tar.bz2.(The "Source code" downloads are generated by GitHub and are incomplete as they are missing some generated files.)

Bug Fixes

• SECURITY fix: Prevent CRAM byte_array decoder from overflowing its output buffer. This could be triggered by c...

Download the source code here: htslib-1.22.tar.bz2.(The "Source code" downloads are generated by GitHub and are incomplete as they are missing some generated files.)

Note this release changes the default output CRAM version from 3.0 to 3.1. HTSlib and SAMtools have been able to read CRAM 3.1 since version 1...

Download the source code here: htslib-1.21.tar.bz2.

The primary user-visible changes in this release are updates to the annot-tsv tool and some speed improvements. Full details of other changes and bugs fixed are below.

Notice: this is the last SAMtools / HTSlib release where CRAM 3.0 will be the def...

Download the source code here: htslib-1.20.tar.bz2.(The "Source code" downloads are generated by GitHub and are incomplete as they are missing some generated files.)

Updates

• When working on named files, bgzip now sets the modified and access times of the output files it makes to match those of...