New
Juicer 1.5.6
- Biggest change is that information describing how this file was produced is now printed in the top of the inter.txt file and added to the .hic file as usual.
- Adding in new flags -b ligation and -t threads
- Changed juicer_arrowhead, juicer_hiccups, and juicer_postprocessing to not fail immediately when bed files not found
- Corrected scripts so bc is not required
- Proper unzipping logic in SLURM and UGER
- Will always split if chunk size sent in
- Bug fixes in terms of looking for endings in splits directory
- Exits changed to 1
- Debugging changed to better determine exactly where script failed
- Touch files added to deal with jobs killed by the cluster
- Warning for genomePath
- Header added to hic file containing all the information about versions of software used to create that file
- Fixed bug in CPU version where multiple fastqs were not processed
- Some other bug fixes in SLURM and CPU