Major updates to CPU, SLURM, and UGER (note that we cannot test PBS or LSF and thus are not updating; since AWS will soon be superseded by ENCODE, we have also ceased development on that branch).
This is the last release before we convert entirely to Juicer 2.0 (the ENCODE version, currently under pre-release).
Major:
- Intra fragment reads are NO LONGER discarded by default. To discard th...